- Den Boon J, Nishikiori M, Zhan H, Ahlquist P. (2024) Positive-strand RNA virus genome replication organelles: structure, assembly, control. Trends in Genetics 40:681-693.
- Spurgeon M, Townsend E, Blaine-Sauera S, McGregore S, Horswill M, den Boon J, Ahlquist P, Kalan L, Lambert P. (2024) Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus infection model. mBio 15:e0093324.
- Bruce J, Park E, Horswill M, Richards A, Potts G, Hebert A, Magnano C, Islam N, Coon JJ, Gitter A, Sherer N, Ahlquist P. (2023) HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B. PLoS Pathogens 19:e1011492.
- Zhan H, Unchwaniwala N, Rebolledo-Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P. Nodavirus RNA replication crown architecture reveals proto-crown precursor and viral protein A conformational switching. bioRxiv (2022) doi: 10.1101/2022.12.16.520638 / Proc Natl Acad Sci U S A (2023) 120:e2217412120.
- Nishikiori, M, den Boon JA, Unchwaniwala N, Ahlquist P. (2022) Crowning touches in positive-strand RNA virus genome replication complex structure and function. Annual Review of Virology, 9:193-212.
- Bruce JW, Bracken M, Evans E, Sherer N, Ahlquist P. (2021) ZBTB2 represses HIV-1 transcription and is regulated by HIV-1 Vpr and cellular DNA damage responses. PLoS Pathogens 17:e1009364.
- Nishikiori, M and Ahlquist P. (2021) Transmembrane redox regulation of genome replication functions in positive-strand RNA viruses. Current Opinion in Virology 47:25-31.
- Unchwaniwala N and Ahlquist P. (2020) Coronavirus dons a new crown. Science 369:1306-1307.
- Unchwaniwala N, Zhan H, Pennington J, Horswill M, den Boon JA and Ahlquist P. (2020) Subdomain cryo-EM structure of nodaviral replication protein A crown complex provides mechanistic insights into RNA genome replication. Proc Natl Acad Sci U S A. 117:18680-18691.
- Nishikiori M and Ahlquist P. (2018) Organelle Luminal Dependence of (+)strand RNA Virus Replication Reveals a Hidden Druggable Target. Science Advances 4:eaap8258.
- Ertel KJ, Benefield D, Castaño-Diez D, Pennington J, Horswill M, den Boon JA, Otegui MS, Ahlquist P. (2017) Cryo-Electron Tomography Reveals Novel Features of a Viral RNA Replication Compartment. eLife 6:e25940.
- Spurgeon M, den Boon J, Horswill M, Barthakur S, Forouzan O, Rader J, Beebe J, Roopra A, Ahlquist P, and Lambert PF. (2017) Human Papillomavirus Oncogenes Reprogram the Cervical Cancer Micro-environment Independently of and Synergistically with Estrogen. Proc Natl Acad Sci USA 114:E9076-E9085.
- Pocock GM, Becker JT, Swanson CM, Ahlquist P, Sherer NM. (2016) HIV-1 and M-PMV RNA Nuclear Export Elements Program Viral Genomes for Distinct Cytoplasmic Trafficking Behaviors. PLoS Pathogens 12:e1005565.
- den Boon J, Pyeon D, Wang S, Horswill M, Schiffman M, Sherman M, Zuna R, Wang Z, Hewitt S, Pearson R, Schott M, Chung L, He Q, Lambert P, Walker J, Newton M, Wentzensen N, and Ahlquist P (2015) Molecular Transitions from Papillomavirus Infection to Cervical Precancer and Cancer: Role of Stromal Estrogen Receptor Signaling. Proc Natl Acad Sci USA 112:E3255-64.